I know you can't supply the plug-ins with the template. I meant it was hard to find the flex menu plugin.
I took a screen shot of what a menu item looked like before enabling the flex menu plugin, and a screen shot of after. Basically it removes all of the joomla framework including save, close, etc. buttons.
I did a quick conflict check on a few older plugins and didn't find a conflict. I'm sure I didn't check all of them though.